PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00034.1.g00630.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family M-type_MADS
Protein Properties Length: 200aa    MW: 21735.7 Da    PI: 9.2623
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00034.1.g00630.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF69.82.5e-222466244
                                  ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
                        SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                                  +i nk  rqvtfskRr+g++KKA+ELS LC+a+vav++fs++ 
  Zpz_sc00034.1.g00630.1.am.mk 24 FIANKNSRQVTFSKRRKGLFKKASELSQLCGARVAVVVFSENS 66
                                  799*************************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004329.4E-271574IPR002100Transcription factor, MADS-box
PROSITE profilePS5006623.7451575IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.88E-251689IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-171737IPR002100Transcription factor, MADS-box
PfamPF003193.3E-242469IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-173752IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-175273IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MAAAMESPRS RKLSQGKQRI QIRFIANKNS RQVTFSKRRK GLFKKASELS QLCGARVAVV  60
VFSENSKPFA VGAPSVDDVL RAYAPLPAED EDAALASCLA WLLDEDDAAG RGGVEAALRQ  120
AEETAALVAA EQARMDAIGK KVMQAKADGR SWWEADVEQL GEAELPEFAR ALRRLRDNVQ  180
RHADQLSSAA AQPPPPMPPK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012701128.11e-65PREDICTED: agamous-like MADS-box protein AGL62 isoform X3
TrEMBLK7VHV62e-58K7VHV6_MAIZE; Putative MADS-box transcription factor family protein
TrEMBLB4FXA45e-58B4FXA4_MAIZE; MADS transcription factor
STRINGOB06G24150.14e-55(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28333088
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.11e-25AGAMOUS-like 61